Variation in frequency of plastid RNA editing within <i>Adiantum</i> implies rapid evolution in fern plastomes

نویسندگان

چکیده

Premise Recent studies of plant RNA editing have demonstrated that the number sites can vary widely among large taxonomic groups (orders, families). Yet, very little is known about intrageneric variation in frequency editing, and no study has been conducted ferns. Methods We determined plastid RNA-editing counts for two species Adiantum (Pteridaceae), A. shastense aleuticum, by implementing a pipeline integrated read-mapping SNP-calling software to identify sites. then compared edits found aleuticum with previously published from capillus-veneris generating alignments each gene. Results direct evidence 505 509 shastense, 350 capillus-veneris. observed striking location three species, reverse (U-to-C) showing higher degree conservation than forward (C-to-U) Additionally, involving start stop codons were highly conserved. Conclusions Variation within implies be rapidly gained or lost throughout evolution. However, varying degrees between both C-to-U U-to-C codons, versus other hints at likely independent origin types potential selective advantage conferred editing.

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

: metadiscourse in introduction sections of applied linguistics and physics research articles: exploring variation in frequency and type

abstract in written mode of language, metadiscourse markers are used commonly to help writers in general and academic writers in particular to produce coherent and professional texts. the purpose of the present study was to compare introduction sections of applied linguistics and physics articles regarding their use of interactive and interactional metadiscourse markers based on the model pro...

15 صفحه اول

Mediated Plastid RNA Editing in Plant Immunity

Plant regulatory circuits coordinating nuclear and plastid gene expression have evolved in response to external stimuli. RNA editing is one of such control mechanisms. We determined the Arabidopsis nuclear-encoded homeodomain-containing protein OCP3 is incorporated into the chloroplast, and contributes to control over the extent of ndhB transcript editing. ndhB encodes the B subunit of the chlo...

متن کامل

Site-selective inhibition of plastid RNA editing by heat shock and antibiotics: a role for plastid translation in RNA editing.

RNA editing in higher plant plastids changes single cytidine residues to uridine through an unknown mechanism. In order to investigate the relation of editing to physiological processes and to other steps in plastid gene expression, we have tested the sensitivity of chloroplast RNA editing to heat shock and antibiotics. We show that heat shock conditions as well as treatment of plants with prok...

متن کامل

Variable Frequency of Plastid RNA Editing among Ferns and Repeated Loss of Uridine-to-Cytidine Editing from Vascular Plants

The distinct distribution and abundance of C-to-U and U-to-C RNA editing among land plants suggest that these two processes originated and evolve independently, but the paucity of information from several key lineages limits our understanding of their evolution. To examine the evolutionary diversity of RNA editing among ferns, we sequenced the plastid transcriptomes from two early diverging spe...

متن کامل

Evolution of RNA editing in trypanosome mitochondria.

Two different RNA editing systems have been described in the kinetoplast-mitochondrion of trypanosomatid protists. The first involves the precise insertion and deletion of U residues mostly within the coding regions of maxicircle-encoded mRNAs to produce open reading frames. This editing is mediated by short overlapping complementary guide RNAs encoded in both the maxicircle and the minicircle ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: American Journal of Botany

سال: 2021

ISSN: ['0002-9122', '1537-2197']

DOI: https://doi.org/10.1002/ajb2.1649